Index A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | R | S | T | U | V | W A add_edge() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) adj (cbcd.skeleton.Skeleton attribute) adjacent() (cbcd.graph.cpdag.CPDAG method) ambiguous (cbcd.collider.ColliderDecisions attribute) ambiguous_triples (cbcd.graph.cpdag.CPDAG attribute) (cbcd.graph.cpdag.PartialCPDAG attribute) anytime_fci() (in module cbcd.algorithms.fci) apds() (in module cbcd.timeseries.lpcmci_sets) apply_to_cpdag() (cbcd.collider.ColliderDecisions method) apply_to_pag() (cbcd.collider.ColliderDecisions method) ARROW (cbcd.graph.marks.EndpointMark attribute) B BackgroundKnowledge (class in cbcd.background) before() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) begin_run() (cbcd.recording.FileRecorder method) (cbcd.recording.NullRecorder method) (cbcd.recording.RunRecorder method) C CachedCITest (class in cbcd.citest.cached) CachedLaggedCITest (class in cbcd.timeseries.citest) cbcd module cbcd.algorithms module cbcd.algorithms.cml module cbcd.algorithms.fci module cbcd.algorithms.lmarvel module cbcd.algorithms.marvel module cbcd.algorithms.pc module cbcd.background module cbcd.citest module cbcd.citest.cached module cbcd.citest.factory module cbcd.citest.fisherz module cbcd.citest.protocol module cbcd.collider module cbcd.exceptions module cbcd.graph module cbcd.graph.base module cbcd.graph.cpdag module cbcd.graph.dag module cbcd.graph.marks module cbcd.graph.pag module cbcd.graph.queries module cbcd.mb module cbcd.recording module cbcd.refinement module cbcd.region module cbcd.rules module cbcd.skeleton module cbcd.timeseries module cbcd.timeseries.algorithms module cbcd.timeseries.citest module cbcd.timeseries.graph module cbcd.timeseries.lagged module cbcd.timeseries.lpcmci module cbcd.timeseries.lpcmci_algo module cbcd.timeseries.lpcmci_pag module cbcd.timeseries.lpcmci_rules module cbcd.timeseries.lpcmci_sets module cbcd.timeseries.skeleton module CBCDDataError CBCDError CBCDInputError children() (cbcd.graph.dag.DAG method) CIRCLE (cbcd.graph.marks.EndpointMark attribute) (in module cbcd.timeseries.lpcmci_pag) CITest (class in cbcd.citest.protocol) CITestResult (class in cbcd.citest.protocol) close() (cbcd.recording.FileRecorder method) cml() (in module cbcd.algorithms.cml) ColliderDecisions (class in cbcd.collider) ColliderOrienter (class in cbcd.collider) colliders (cbcd.collider.ColliderDecisions attribute) combine_middle() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) complete_lpcmci_pag() (in module cbcd.timeseries.lpcmci_pag) CONFLICT (in module cbcd.timeseries.lpcmci_pag) contemporaneous_tiers (cbcd.timeseries.lagged.LaggedBackgroundKnowledge attribute) copy() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) CPDAG (class in cbcd.graph.cpdag) CPDAGRules (class in cbcd.rules) D DAG (class in cbcd.graph.dag) data (cbcd.timeseries.lagged.LaggedDataset attribute) decode() (cbcd.timeseries.graph.TimeSeriesPAG method) decode_grid() (in module cbcd.timeseries.lpcmci_pag) definite_edges() (cbcd.graph.pag.PAG method) definite_non_colliders (cbcd.graph.cpdag.CPDAG attribute) details() (cbcd.citest.cached.CachedCITest method) (cbcd.citest.fisherz.FisherZ method) (cbcd.citest.protocol.CITest method) (cbcd.timeseries.citest.CachedLaggedCITest method) (cbcd.timeseries.citest.LaggedCITest method) (cbcd.timeseries.citest.ParCorr method) (cbcd.timeseries.citest.WindowedCITest method) df (cbcd.citest.protocol.CITestResult attribute) (cbcd.timeseries.citest.LaggedCITestResult attribute) directed_edges() (cbcd.graph.cpdag.CPDAG method) (cbcd.graph.dag.DAG method) dst (cbcd.timeseries.graph.LaggedEdge attribute) E Edge (class in cbcd.graph.marks) edge_exists() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) edge_str() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) edges() (cbcd.timeseries.graph.TimeSeriesPAG method) EndpointMark (class in cbcd.graph.marks) extra (cbcd.citest.protocol.CITestResult attribute) (cbcd.timeseries.citest.LaggedCITestResult attribute) F FAS (class in cbcd.skeleton) fci() (in module cbcd.algorithms.fci) FCIRules (class in cbcd.rules) FileRecorder (class in cbcd.recording) find_discriminating_path() (in module cbcd.graph.queries) find_uncovered_circle_path() (in module cbcd.graph.queries) find_uncovered_pd_path() (in module cbcd.graph.queries) finish_run() (cbcd.recording.NullRecorder method) (cbcd.recording.RunRecorder method) FisherZ (class in cbcd.citest.fisherz) forbidden_adjacent (cbcd.background.BackgroundKnowledge attribute) forbidden_directed (cbcd.background.BackgroundKnowledge attribute) forbidden_lagged (cbcd.timeseries.lagged.LaggedBackgroundKnowledge attribute) from_directed_edges() (cbcd.graph.dag.DAG class method) G grid_id() (in module cbcd.timeseries.lpcmci_pag) grid_size (cbcd.timeseries.graph.TimeSeriesPAG property) grow_shrink() (in module cbcd.mb) H has_nonempty_middle() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) has_nonempty_middle_incl_bang() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) HEAD (in module cbcd.timeseries.lpcmci_pag) I i (cbcd.graph.marks.Edge attribute) iamb() (in module cbcd.mb) IMin (in module cbcd.timeseries.lpcmci_algo) InMemoryRecorder (class in cbcd.recording) inter_iamb() (in module cbcd.mb) is_ancestor_of() (cbcd.graph.pag.MAG method) is_bidirected (cbcd.graph.marks.Edge property) is_cached() (cbcd.citest.cached.CachedCITest method) (cbcd.timeseries.citest.CachedLaggedCITest method) is_circle() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) is_circle_circle (cbcd.graph.marks.Edge property) is_contemporaneous (cbcd.timeseries.lagged.LaggedVar property) is_directed (cbcd.graph.marks.Edge property) is_forbidden_adjacent() (cbcd.background.BackgroundKnowledge method) is_forbidden_directed() (cbcd.background.BackgroundKnowledge method) is_forbidden_lagged() (cbcd.timeseries.lagged.LaggedBackgroundKnowledge method) is_head() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) is_required_directed() (cbcd.background.BackgroundKnowledge method) is_required_lagged() (cbcd.timeseries.lagged.LaggedBackgroundKnowledge method) is_tail() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) is_undirected (cbcd.graph.marks.Edge property) J j (cbcd.graph.marks.Edge attribute) L lag (cbcd.timeseries.graph.LaggedEdge property) (cbcd.timeseries.lagged.LaggedVar attribute) lagged_node_id() (in module cbcd.timeseries.lagged) LaggedBackgroundKnowledge (class in cbcd.timeseries.lagged) LaggedCITest (class in cbcd.timeseries.citest) LaggedCITestResult (class in cbcd.timeseries.citest) LaggedDataset (class in cbcd.timeseries.lagged) LaggedEdge (class in cbcd.timeseries.graph) LaggedSkeleton (class in cbcd.timeseries.skeleton) LaggedSkeletonAlgorithm (class in cbcd.timeseries.skeleton) LaggedVar (class in cbcd.timeseries.lagged) lmarvel() (in module cbcd.algorithms.lmarvel) load_run() (in module cbcd.recording) lpcmci() (in module cbcd.timeseries.lpcmci) lpcmci_skeleton() (in module cbcd.timeseries.lpcmci) LPCMCIPAG (class in cbcd.timeseries.lpcmci_pag) M m_separated() (cbcd.graph.pag.MAG method) MAG (class in cbcd.graph.pag) MajorityColliderOrienter (class in cbcd.collider) make_ci_test() (in module cbcd.citest.factory) make_lagged_ci_test() (in module cbcd.timeseries.citest) mark() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) mark_at_dst (cbcd.timeseries.graph.LaggedEdge attribute) mark_at_i (cbcd.graph.marks.Edge attribute) mark_at_j (cbcd.graph.marks.Edge attribute) mark_at_src (cbcd.timeseries.graph.LaggedEdge attribute) marvel() (in module cbcd.algorithms.marvel) max_cond_set (cbcd.refinement.PossibleDSepRefinement attribute) max_lag (cbcd.timeseries.citest.CachedLaggedCITest attribute) (cbcd.timeseries.citest.LaggedCITest attribute) (cbcd.timeseries.citest.ParCorr attribute) (cbcd.timeseries.citest.WindowedCITest attribute) (cbcd.timeseries.graph.TimeSeriesPAG attribute) (cbcd.timeseries.lagged.LaggedDataset attribute) (cbcd.timeseries.lpcmci_pag.LPCMCIPAG attribute) (cbcd.timeseries.skeleton.LaggedSkeleton attribute) mci_skeleton() (in module cbcd.timeseries.lpcmci) MeekRules (class in cbcd.rules) metrics() (cbcd.recording.InMemoryRecorder method) middle() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) MM_BANG (in module cbcd.timeseries.lpcmci_pag) mm_combine() (in module cbcd.timeseries.lpcmci_pag) MM_EMPTY (in module cbcd.timeseries.lpcmci_pag) MM_L (in module cbcd.timeseries.lpcmci_pag) MM_Q (in module cbcd.timeseries.lpcmci_pag) MM_R (in module cbcd.timeseries.lpcmci_pag) mmpc() (in module cbcd.mb) module cbcd cbcd.algorithms cbcd.algorithms.cml cbcd.algorithms.fci cbcd.algorithms.lmarvel cbcd.algorithms.marvel cbcd.algorithms.pc cbcd.background cbcd.citest cbcd.citest.cached cbcd.citest.factory cbcd.citest.fisherz cbcd.citest.protocol cbcd.collider cbcd.exceptions cbcd.graph cbcd.graph.base cbcd.graph.cpdag cbcd.graph.dag cbcd.graph.marks cbcd.graph.pag cbcd.graph.queries cbcd.mb cbcd.recording cbcd.refinement cbcd.region cbcd.rules cbcd.skeleton cbcd.timeseries cbcd.timeseries.algorithms cbcd.timeseries.citest cbcd.timeseries.graph cbcd.timeseries.lagged cbcd.timeseries.lpcmci cbcd.timeseries.lpcmci_algo cbcd.timeseries.lpcmci_pag cbcd.timeseries.lpcmci_rules cbcd.timeseries.lpcmci_sets cbcd.timeseries.skeleton N n (cbcd.timeseries.lpcmci_pag.LPCMCIPAG attribute) n_effective (cbcd.citest.protocol.CITestResult attribute) (cbcd.timeseries.citest.LaggedCITestResult attribute) n_samples (cbcd.timeseries.lagged.LaggedDataset property) n_series (cbcd.timeseries.graph.TimeSeriesPAG attribute) n_vars (cbcd.citest.cached.CachedCITest attribute) (cbcd.citest.fisherz.FisherZ attribute) (cbcd.citest.protocol.CITest attribute) (cbcd.skeleton.Skeleton attribute) (cbcd.timeseries.citest.CachedLaggedCITest attribute) (cbcd.timeseries.citest.LaggedCITest attribute) (cbcd.timeseries.citest.ParCorr attribute) (cbcd.timeseries.citest.WindowedCITest attribute) (cbcd.timeseries.lagged.LaggedDataset property) (cbcd.timeseries.skeleton.LaggedSkeleton attribute) napds() (in module cbcd.timeseries.lpcmci_sets) neighbors() (cbcd.graph.cpdag.CPDAG method) (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) no_autoregressive (cbcd.timeseries.lagged.LaggedBackgroundKnowledge attribute) no_contemporaneous (cbcd.timeseries.lagged.LaggedBackgroundKnowledge attribute) NO_EDGE (cbcd.graph.marks.EndpointMark attribute) (in module cbcd.timeseries.lpcmci_pag) node_id() (cbcd.timeseries.graph.TimeSeriesPAG method) non_colliders (cbcd.collider.ColliderDecisions attribute) NullRecorder (class in cbcd.recording) O order_by_imin() (in module cbcd.timeseries.lpcmci_sets) orient() (in module cbcd.timeseries.lpcmci_rules) orient_region() (in module cbcd.region) P p_value (cbcd.citest.protocol.CITestResult attribute) (cbcd.timeseries.citest.LaggedCITestResult attribute) PAG (class in cbcd.graph.pag) PAGRules (class in cbcd.rules) PAGSkeletonRefinement (class in cbcd.refinement) ParCorr (class in cbcd.timeseries.citest) parents (cbcd.timeseries.skeleton.LaggedSkeleton attribute) parents() (cbcd.graph.cpdag.CPDAG method) (cbcd.graph.dag.DAG method) (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) PartialCPDAG (class in cbcd.graph.cpdag) PartialPAG (class in cbcd.graph.pag) PartialTimeSeriesCPDAG (class in cbcd.timeseries.graph) pc() (in module cbcd.algorithms.pc) PC1Skeleton (class in cbcd.timeseries.skeleton) pcmci() (in module cbcd.timeseries.algorithms) pcmci_plus() (in module cbcd.timeseries.algorithms) PCStable (class in cbcd.skeleton) possible_dsep() (in module cbcd.graph.queries) PossibleDSepRefinement (class in cbcd.refinement) possibly_directed() (cbcd.graph.pag.PAG method) present_edges() (cbcd.timeseries.graph.TimeSeriesPAG method) present_nodes() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) Proposal (in module cbcd.timeseries.lpcmci_rules) pvalues_max (cbcd.skeleton.Skeleton attribute) R record_ci() (cbcd.recording.NullRecorder method) (cbcd.recording.RunRecorder method) record_collider() (cbcd.recording.NullRecorder method) (cbcd.recording.RunRecorder method) record_region() (cbcd.recording.NullRecorder method) (cbcd.recording.RunRecorder method) record_rule() (cbcd.recording.NullRecorder method) (cbcd.recording.RunRecorder method) register_ci_test() (in module cbcd.citest.factory) register_lagged_ci_test() (in module cbcd.timeseries.citest) remove_edge() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) required_directed (cbcd.background.BackgroundKnowledge attribute) required_lagged (cbcd.timeseries.lagged.LaggedBackgroundKnowledge attribute) requires_max_pvalues (cbcd.collider.ColliderOrienter attribute) (cbcd.collider.MajorityColliderOrienter attribute) (cbcd.collider.SepsetOrienter attribute) rfci() (in module cbcd.algorithms.fci) rule_apr() (in module cbcd.timeseries.lpcmci_rules) rule_collider() (in module cbcd.timeseries.lpcmci_rules) rule_mmr() (in module cbcd.timeseries.lpcmci_rules) rule_r1() (in module cbcd.timeseries.lpcmci_rules) rule_r2() (in module cbcd.timeseries.lpcmci_rules) rule_r3() (in module cbcd.timeseries.lpcmci_rules) rule_r8() (in module cbcd.timeseries.lpcmci_rules) rule_r9() (in module cbcd.timeseries.lpcmci_rules) rules (cbcd.rules.FCIRules attribute) (cbcd.rules.MeekRules attribute) RULES_FULL (in module cbcd.timeseries.lpcmci_rules) RULES_PRELIM_LAGGED (in module cbcd.timeseries.lpcmci_rules) run_lpcmci() (in module cbcd.timeseries.lpcmci_algo) RunRecorder (class in cbcd.recording) S SepSet (in module cbcd.timeseries.lpcmci_rules) SepsetOrienter (class in cbcd.collider) sepsets (cbcd.graph.pag.PAG attribute) (cbcd.graph.pag.PartialPAG attribute) (cbcd.skeleton.Skeleton attribute) (cbcd.timeseries.skeleton.LaggedSkeleton attribute) set_mark() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) set_middle() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) Skeleton (class in cbcd.skeleton) SkeletonAlgorithm (class in cbcd.skeleton) sound_orient() (in module cbcd.timeseries.lpcmci_algo) src (cbcd.timeseries.graph.LaggedEdge attribute) statistic (cbcd.citest.protocol.CITestResult attribute) (cbcd.timeseries.citest.LaggedCITestResult attribute) T tables (cbcd.recording.InMemoryRecorder property) TAIL (cbcd.graph.marks.EndpointMark attribute) (in module cbcd.timeseries.lpcmci_pag) tiers (cbcd.background.BackgroundKnowledge attribute) time_index (cbcd.timeseries.lagged.LaggedDataset attribute) TimeSeriesCPDAG (class in cbcd.timeseries.graph) TimeSeriesDAG (class in cbcd.timeseries.graph) TimeSeriesPAG (class in cbcd.timeseries.graph) to_contemporaneous_graph() (cbcd.timeseries.graph.PartialTimeSeriesCPDAG method) (cbcd.timeseries.graph.TimeSeriesCPDAG method) (cbcd.timeseries.graph.TimeSeriesDAG method) to_dag_extension() (cbcd.graph.cpdag.CPDAG method) to_frames() (cbcd.recording.InMemoryRecorder method) to_pag() (cbcd.graph.pag.MAG method) to_summary_graph() (cbcd.timeseries.graph.PartialTimeSeriesCPDAG method) (cbcd.timeseries.graph.TimeSeriesCPDAG method) (cbcd.timeseries.graph.TimeSeriesDAG method) to_timeseries_pag() (cbcd.timeseries.lpcmci_pag.LPCMCIPAG method) track_max_pvalue (cbcd.skeleton.PCStable attribute) U undirected_edges() (cbcd.graph.cpdag.CPDAG method) V var (cbcd.timeseries.lagged.LaggedVar attribute) var_names (cbcd.citest.fisherz.FisherZ attribute) (cbcd.timeseries.graph.TimeSeriesPAG attribute) (cbcd.timeseries.lagged.LaggedDataset attribute) W window (cbcd.timeseries.graph.TimeSeriesPAG attribute) WindowedCITest (class in cbcd.timeseries.citest)